Restriction Enzymes

Question 1: Define restriction enzymes and Recognition sites.

Answer: 

It is an enzyme that cleaves DNA into pieces at or close to particular molecular recognition sites. A recognition site is a location that a restriction enzyme selects in order to break DNA.
These locations are found on a DNA molecule and contain particular nucleotide sequences (4-8 base pairs)

Question 2: Write the applications of the restriction enzyme.

Answer:

Applications of the restriction enzyme:

  1. Genetic engineering
  2. Used in methods for DNA fingerprinting.
  3. They help in gene cloning, protein expression research, and the insertion of genes into plasmid vectors.
  4. By specifically identifying single base variations in DNA as single nucleotide polymorphism, they are also useful to distinguish gene alleles.
  5. DNA mapping.
  6. Gene sequencing.

Question 3: In which year was the first restriction enzyme identified?

Answer:

 In 1970 the first restriction enzyme was identified.

Question 4: Write the difference between Endonuclease and Exonuclease.

Answer:

Endonuclease

Exonuclease

A class of enzymes known as endonucleases cleaves the phosphodiester bond found within a polynucleotide chain. Exonucleases are enzymes that individually cleave DNA sequences from a polynucleotide chain’s 5′ or 3′ end.
Endonucleases split the nucleotide sequence down the middle. Exonucleases cleave the ends of a nucleotide sequence.
There is a lag phase before some endonucleases, such as restriction endonucleases, start to work. There is no delay in the commencement of exonuclease activity
The endonuclease slices a piece of DNA in the middle, forming oligonucleotides. DNA sequences are broken down by exonucleases into single nucleotides or nucleosides.


Restriction Enzymes

Restriction enzyme is a bacterial protein that cleaves DNA at particular locations, these sites are called restricted sites. The restriction enzymes guard against bacteriophages in living bacteria. They identify the bacteriophage and cleave it at its restriction sites, destroying its DNA. Important genetic engineering tools include restriction enzymes. They may be separated from bacteria and applied in research facilities. The recognition sequences, or short and distinct nucleotide sequences, are recognized by restriction enzymes in DNA. When a DNA sequence is recognized by the restriction enzyme, it hydrolyzes the bond between neighboring nucleotides and cleaves the DNA molecule. The bacteria use the enzyme methylases to add the methyl group at the adenine or cytosine bases within the recognition sequence, preventing the DNA sequences from disintegrating.

Similar Reads

History

In the year 1970, the first restriction enzyme was discovered and identified as such. Since then, more than 3000 restriction enzymes have been thoroughly investigated, and more than 600 of them are now commercially available and often employed in labs to modify and alter DNA. In 1963, scientists discovered the two enzymes that limit bacteriophage development in E. coli. One was an enzyme that sliced DNA, whilst the other added methyl groups to DNA. Restriction endonuclease was the name given to it later. These enzymes are divided into Exonucleases and Endonucleases based on how they function....

Exonucleases and Endonucleases

Exonucleases: Restrictions exonucleases, such as exonuclease I, exonuclease II, etc., are largely responsible for hydrolyzing the terminal nucleotides from the end of DNA or RNA molecules in either a 5′ to 3′ or 3′ to 5′ direction. Endonuclease: Restrictions endonucleases identify certain base sequences (restricted sites) within DNA or RNA molecules and catalyze the breakdown of internal phosphodiester bonds with enzymes like EcoRI, Hind III, and BamHI....

Recognition Site

DNA molecules contain restriction sites, also known as restriction recognition sites, that are particular (4–8 base pair long) nucleotide sequences that are recognized by restriction enzymes. Because restriction enzymes often bind as homodimers, these sequences are typically palindromic. A particular restriction enzyme may cut the sequence between two nucleotides within its recognition site or somewhere adjacent....

Types

Type I enzymes- The DNA at any distant position from a recognition site is cut by these restriction enzymes. The unique ATP and S-adenosyl-L-methionine are what trigger the activation of these restriction enzymes. These enzymes are still unique and possess multiple functions, including methylase and restriction digestion. Type II enzymes- This kind of restriction enzyme can cleave or split DNA from a location close to the actual recognition site. It does need a lot of magnesium to work properly. This enzyme is functional for single use and is independent of methylase. Type III enzymes- Additionally, this restriction enzyme fragments DNA at a location close to the real recognition site. It needs ATP to function, but it doesn’t need any hydrolase. The beginning of the reaction requires S-adenosyl-L-methionine. However, once the reaction starts, enzyme activity is irrelevant. With the aid of a modification methylase, this restriction enzyme can aid in the digestion of DNA. Type IV- The type IV restriction enzyme is a unique endonuclease that only works on DNA that has been altered. This restriction endonuclease, which works on DNA, is frequently employed in the biotechnology industry. Methylated and hydroxymethylated enzymes are two examples of restriction enzymes. Type V- The Type V restriction enzyme does not function as a DNA reaction enzyme. An RNA guide known as the gRNAs catalyzes this restriction endonuclease’s action on RNA....

Nomenclature

There have been numerous identifications of restriction enzymes since their discovery in the 1970s; for instance, more than 3500 distinct Type II restriction enzymes have been characterized. Using a naming scheme based on bacterial genus, species, and strain, each enzyme is named after the bacterium from which it was obtained.For example, the EcoRI restriction enzyme’s name...

Importance

It is crucial to understand restriction enzymes since they are utilized in Restriction Fragment Length Polymorphisms, which reveal genetic differences and mutations, as well as in the treatment of cancer. They are composed of two long strands of DNA fused with these restriction enzymes to locate certain DNA sequences and cleave them there. It is used to distinguish the type of mutation from the variation. Restriction enzymes recognize two nucleotides on one strand of DNA, which then cleave the strand. A specific kind of nucleotide sequence in a segment of DNA can be cut by restriction enzymes. So, DNA analysis is done using these enzymes....

Application

In molecular biology research, restriction endonucleases are frequently employed for the following purposes:...

Examples

EcoRI, HindIII, and NotI are a few well-known examples of restriction enzymes....

FAQs on Restriction Enzymes

Question 1: Define restriction enzymes and Recognition sites....

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